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gtatgtgcctcctttcttttgctgattagctttatccagacgtacagttgacctgattttttggaatatttctgggaactttcatgaactttaaagcatatttttctattagGTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGAAATTGATGTAATTCTCAAGACTTTAGTGGACGAGGAGGAG
species | Arabidopsis thaliana |
transcript | AT3G45190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTATTGTTGAAGAATCTCCTGAAGATGCTGACAGCAAGCGCGCTTTCAA GTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGAAATTGATEST: gi|125063931|gb|EL131732.1|EL131732
genomic: TTTATTGTTGAAGAATCTCCTGAAGATGCAGACAGCAAGCGCGCTTTCAAgtatgtgcct ... tttctattagGTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGAAATTGAT
EST: TTTATTGTTGAAGAATCTCCTGAAGATGCAGACAGCAAGCGCGCTTTCAA GTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGA
genomic: TTTATTGTTGAAGAATCTCCTGAAGATGCAGACAGCAAGCGCGCTTTCAAgtatgtgcct ... tttctattagGTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGA
tttttggaatatttctgggaactttcatgaactttaaagcatatttttctattagGTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGAAATTGATGTAATTCTCAAGACTTTAGTGGACGAGGAGGAG
tttttctatt CT-rich tract
tttaaagcatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcctcctttcttttgctgattagctttatccagacgtacagttgacctgattttttggaatatttctgggaactttcatgaactttaaagcatatttttctattagGTTTCCTTTCATCTCCTCTGAAGTCTTGACCTGTGAAATTGATGTAATTCTCAAGACTTTAGTGGACGAGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG