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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtagtgatgtttttggtgaaaaacgaacacaccgagtataaggtgggttaaacttactataaatggagCGTCTCGTGGAAACTCGGGACTGGCCACTGCTTGGGGGTGATCCGATGGGGAGGTATTATGGCTGGGAGGGTTCACGCTGAACATAGGTATATGCTCAAC

Basic information

species Arabidopsis thaliana
transcript AT3G43940.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgaaaaacgaacacaccgagtataaggtgggttaaacttactataaatggagCGTCTCGTGGAAACTCGGGACTGGCCACTGCTTGGGGGTGATCCGATGGGGAGGTATTATGGCTGGGAGGGTTCACGCTGAACATAGGTATATGCTCAAC
                                     aacttac  putative branch site (score: 2)
                                  ttaaacttactataaa  TA-rich tract