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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaggttatattacaaataatgtttattcataaatcagattttaaggttacaaaagataatgagataattatgtatgtatagGTGGACTTGTCTGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGATCACAACGCTTGCTTGGTCCACAATTACCT

Basic information

species Arabidopsis thaliana
transcript AT3G43860.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43860.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 1
---------------------------gtaagtttaggttatattacaaataatgtttattcataaatcagattttaaggttacaaaagataatgagataattatgtatgtatagGTGGACTTGTCTGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGATCACAACGCTTGCTTGGTCCACAATTACCT
                             |  | ||    |  | |||   || |   ||  ||| |  |  || | |  |   |  | ||||| | ||| | || ||| ||||||||||| |  |||| || |||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||  | || ||||| || |||    | |||   |
gtacatatctttctatctcttaaaaacacatatatacacaaattaacatgcaaagagaatg-atagaataatttgtgatatcttatcatataatta-atattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTTCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT

upper sequence: AT3G43860.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtttaggttatattacaaataatgtttattcataaatcagattttaaggttacaaaagataatgagataattatgtatgtatagGTGGACTTGTCTGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGATCACAACGCTTGCTTGGTCCACAATTACCT
|| || |||  || | | | || || | ||| ||         | ||| |    |  |           |||   | |     | |||| |||  |   |||||| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||  | || || ||| | |||||  | ||    |
gtgagattattttctgtcaaaagtactattttttttc---cgggttttcaccaatttattgatctgaatgattggttttcgcatttagGCGGATCTTGTTGGAGGATATTATGATGCAGGAGACAATGTGAAGTATGGGCTTCCCATGGCTTTCACTGTTACCACTCTTTCATGGTCAGCTATCTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataaatcagattttaaggttacaaaagataatgagataattatgtatgtatagGTGGACTTGTCTGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGATCACAACGCTTGCTTGGTCCACAATTACCT
                        aaaagataatgagata  TA-rich tract