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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgtctgcttcacaaggattacttacaacttctacattcttccaaggaaactgagtttctactaacttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G29090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G49740.1 (Glycine max), 5'ss of exon 4
CTCTCTTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgtctgc---------ttcacaaggattacttacaacttctacattcttccaaggaaactgagtttctactaacttgtttgcag------------------
| || ||||| ||||| |||||||||||||| |||  ||| || ||||| ||||| ||| ||||||| || |||||| | |||||||||||||||||||||| ||          ||  | ||  |||   |   | |||||  |||   |  | |  | ||  | ||  ||||| | |  |                   
CACTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCGGGCTTCATAACCGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGgtgtgtaactgatcattttccagtgttaacaatctcatctaccatctattactgcactttagactttag-aacttctctaaactgtccaatgaggaaagag

upper sequence: AT3G29090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G36950.1 (Glycine max), 5'ss of exon 4
CTCTCTTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgt------ctgctt---cacaaggattacttacaacttctacattcttccaaggaaactgagtttctactaacttgtt-tgcag----------------
|||| ||||| ||||| |||||||||||||| |||   || || ||||| ||||| ||| ||||||| || |||||| | ||||||||||||||||||||||      ||| ||     | ||  |||   |   | |||||   ||      | |  | ||| | ||  |   |    | |||                
CTCTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCAGGCTTCATAACCGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGgtgagtaactgattactttccagtgttaacaatctcatctaccacctattgctgcactttagtctttagaagtctacaatccagtgttgttcttaaactg

upper sequence: AT3G29090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0108g01170.t01 (Vitis vinifera), 5'ss of exon 4
CTCTCTTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgtctgcttcacaaggattac--ttacaacttctacatt-----cttccaaggaaactgagtttctactaacttgtttgcag--------------------
|||| ||||| || || ||||| |||||||| ||   ||| || ||||||||||||||  | ||||| ||||||||||| ||||| ||||||||| | |||| ||    |    | || |  || ||| ||||| | |     ||   || |||  | |  |||||  |   || ||| |                     
CTCTGTTGGAGCATTGTCATATTCACTGCAAGTCAGCGGGATTCATAACAGCACAAAGTAGGAAATCTTCTCAGGAATCAACTGGCTATGTATTCCTCAGgtgtgtaataaccagtttccaatttcaaattctaaagtatggcctattaaagaacttcaaattctaa-agtatggttgtaaaaataagggcttgatactgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124828381|gb|EH913247.1|EH913247
EST:     GCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAG                         ATGTGTGATCACGGGTAATGGTCAGAGCG
genomic: GCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgtctgcttca ... ttgtttgcagATGTGTGATCACGGGTAATGGTCAGAGCG
EST: gi|124737048|gb|EH828450.1|EH828450
EST:     CAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAG                         ATGTGTGATCACGGGTAATGGTCAGAGCGGGTATATGTATCTCGGAAGGCC
genomic: CAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgtctgcttca ... ttgtttgcagATGTGTGATCACGGGTAATGGTCAGAGCGGGTATATGTATCTCGGAAGGCC
EST: gi|116438151|gb|EG480743.1|EG480743
EST:     GCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAG                         ATGTGTGATCACGGGTAATGGTCAGAGCGGGTATATGTATCTCGGAAGGCC
genomic: GCACAAAGCCGAAAATCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGgtctgcttca ... ttgtttgcagATGTGTGATCACGGGTAATGGTCAGAGCGGGTATATGTATCTCGGAAGGCC