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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtaataggagtcaattgtaaactttgctgcttcaaatatcttttgctagcttatccattccctgttttttagattttgtttaatcattcagtgaggagaacaaattggtatttgataatttggtgtttctatctgtagCTGCAGAAGGAGCTTGACGACTATGAGAAGAAAATGTCACTCATGGAGGCCATTACAGACAAAACGAATTCAGTGCAAGTTCTCACTAGATATCCTTTAA

Basic information

species Arabidopsis thaliana
transcript AT3G28370.1
intron # 7
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattcagtgaggagaacaaattggtatttgataatttggtgtttctatctgtagCTGCAGAAGGAGCTTGACGACTATGAGAAGAAAATGTCACTCATGGAGGCCATTACAGACAAAACGAATTCAGTGCAAGTTCTCACTAGATATCCTTTAA
                          atttgat  putative branch site (score: 5)
                                          tttctatct  putative PPT
                         tatttgataattt  TA-rich tract