1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttaatcgatagtatatacgttaggatttgagtattgattgctttaggatttcgttttggtattatactctttgatctgatggatgcgaaattgtatcagAGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGTGGTTTCATGGAACTTTCTGTTTCCTCTCCAAAGCAAAGTGTGTTATCTCCACCTGATTGT
species | Arabidopsis thaliana |
transcript | AT3G27700.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTCTGTGAAGAGGAGCGAACAGAGTCACTGATTATTCCAAGAGAACCA AGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGNGGTTTCATGGAEST: gi|86060822|gb|DR356579.1|DR356579
genomic: TTGTCTGTGAAGAGGAGCGAACAGAGTCACTGATTATTCCAAGAGAACCTgtaagattta ... attgtatcagAGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGTGGTTTCATGGA
EST: TTGTCTGTGAAGAGGAGCGAACAGAGTCACTGATTATTCCAAGAGAACCA AGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGTGGTTTCATGGA
genomic: TTGTCTGTGAAGAGGAGCGAACAGAGTCACTGATTATTCCAAGAGAACCTgtaagattta ... attgtatcagAGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGTGGTTTCATGGA
aggatttcgttttggtattatactctttgatctgatggatgcgaaattgtatcagAGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGTGGTTTCATGGAACTTTCTGTTTCCTCTCCAAAGCAAAGTGTGTTATCTCCACCTGATTGT
atctgat putative branch site (score: 4)
tattatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaatcgatagtatatacgttaggatttgagtattgattgctttaggatttcgttttggtattatactctttgatctgatggatgcgaaattgtatcagAGTTTTGTATGAGAGACAAGAAGCTCTGCAATATTGAAGTGGTTTCATGGAACTTTCTGTTTCCTCTCCAAAGCAAAGTGTGTTATCTCCACCTGATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG