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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctgtttttcacgcaccatttcagactcatttcaacaatgtataagaaaccaataagaactaacctcaagctattcaaacccgcatgatgcatatctggttccagAGGAAATCTGACGA

Basic information

species Arabidopsis thaliana
transcript AT3G27460.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124903906|gb|EH977986.1|EH977986
EST:     CCTCTACAAGGCAACTGTTATAAGTACCCCACGAAAG                         AGGAAATCTGACGA
genomic: CCTCTACAAGGCAACTGTTATAAGTACCCCACGAAAGgttagctgtt ... ctggttccagAGGAAATCTGACGA
EST: gi|86086111|gb|DR381870.1|DR381870
EST:     CAGGAACCACAGCCCTCTACAAGGCAACTGTTATAAGTACCCCACGAAAG                         AGGAAATCTGACGA
genomic: CAGGAACCACAGCCCTCTACAAGGCAACTGTTATAAGTACCCCACGAAAGgttagctgtt ... ctggttccagAGGAAATCTGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caataagaactaacctcaagctattcaaacccgcatgatgcatatctggttccagAGGAAATCTGACGA
       aactaac  putative branch site (score: 1)
                     tattcaaa  TA-rich tract