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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCATGAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGgtacagcaacaacagctacttctttcttttgagtttccaccaaaattggctaacttttttgtggcatctgatttatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G27460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27460.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0066g00210.t01 (Vitis vinifera), 5'ss of exon 5
ACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCATGAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGgta-----------cagcaacaacagc-tacttctttcttttgagtttccaccaaaattggctaacttttttgtggcatctgatttatgtag-----------------------------------------------------------------
 ||||| |  ||  | |||||    ||| ||||| |  |  |   |||||| |||||  |||| ||| | ||||    |||||||||||||||||||||||||           |  ||   |     |||   | | || |   | |  | || | ||  |    |||| | ||       | |||  |||                                                                 
GCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTCGGCCTTCTCCATCCATTCGAAACCAACTTGAGGTTGCTGCTAGTCTAAAGGGTGAACAGgtaagcattttgttctacagttatgatgtacccatgttttctttctgtatagcacatttaacctttttttctttgtttctaaacttagatagcacttcttgcagttctattcttatctcttttaatgttgaaaatttggaatcactatatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124958700|gb|EL033426.1|EL033426
EST:     CTTCCATGAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAG                         GTTGCTGCAAGAGTCACAGCT
genomic: CTTCCATGAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGgtacagcaac ... atttatgtagGTTGCTGCAAGAGTCACAGCT