1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAATCATCAGAATCTAACTTCTTTGGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGgtacatttctcgactcttgcattgatagattgtttgctacagttgggtaacaactagttctgggaattagcttctttgttagaccaatgttttttggaca...
species | Arabidopsis thaliana |
transcript | AT3G26060.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAG CAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATCAAAATEST: gi|164055433|gb|ES179878.1|ES179878
genomic: TCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGgtacatttct ... tggtgggcagCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATCAAAAC
EST: TCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAG CAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATCAAAATEST: gi|125221754|gb|EL235839.1|EL235839
genomic: TCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGgtacatttct ... tggtgggcagCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATCAAAAC
EST: CCTCTTCTCTCAAAGGCTTAATCTTTGCCAAG CAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATACAAAAEST: gi|116447992|gb|EG490584.1|EG490584
genomic: CCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGgtacatttct ... tggtgggcagCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGAT-CAAAA
EST: ATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAG --G-TTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATCAAAAC
genomic: ATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGgtacatttct ... tggtgggcagCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGATCAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATCATCAGAATCTAACTTCTTTGGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGgtacatttctcgactcttgcattgatagattgtttgctacagttgggtaacaactagttctgggaattagcttctttgttagaccaatgttttttggaca
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