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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCTTTACTTGACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTTAGAGAACTTCTTACCACAAAACTTCCCTCTGGAACATTTCCGGTCAAGgtatgttgtcgtttcatgttaagagctaatcttaatgttcttgaagatgagtttttttttctttttcttatagagattgtttgtgaatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G24210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G140394_T03 (Zea mays), 5'ss of exon 2
GCTTCCTTTACTTGACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTTAGAGAACTTCTTACCACAAAACTTCCCTCTGGAACATTTCCGGTCAAGgtatgttgtcgtttcatgttaagagcta-atcttaatgttcttgaagatgagtttttttttctttt-tcttatagagattgtttgtgaatgtag-------
||| || || ||||| || |||||||||||||| ||||| ||||||||| | || || || ||||| |||||||| ||  | || |||||||| ||||||||||||| | | | || |||   || |  | |  ||  ||||  |    |  | |       || | | || |    |||     ||| |||         
GCTGCCATTGCTTGATATTCTTGCAAACAAAGTGAAGGCAATTCGTCGTTTGAGGGATCTACTTACAACAAAACTCCCTCCAGGCACATTTCCTGTCAAGgtatgttct-gatacacgtttcaagatgcagcaaaaccttctctatagagcttgtcccaccattatgtgttctgttaattcaccttgattgtttcatatct

upper sequence: AT3G24210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G18890.1 (Glycine max), 5'ss of exon 1
GCTTCCTTTACTTGACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTTAGAGAACTTCTTACCACAAAACTTCCCTCTGGAACATTTCCGGTCAAGgtatgttgtcgt----ttcatgttaagagctaatcttaatgttcttgaagatgagtttttttttctttttcttatagagattgtttgtgaatgtag----
  | || || ||||||||  |||||||||||||||| || ||||| ||| | |||||||| ||||| || ||||||||    ||||| ||||| || ||||| |||  || |    || |  |||||| ||| |  ||  | | |  |   |  |    | | |    ||||||    | ||   | | | | |      
CTTGCCATTGCTTGACATTGTTGCAAACAAAGTTAAAGCAATTCGACGTTTAAGAGAACTCCTTACAACGAAACTTCCAATGGGAACTTTTCCTGTTAAGgtctgtgctcatcatctttaatttaagacctattactagagatatgaatattctgggcatatgtgaaattcttaatttgcttccattttattttcttctg

upper sequence: AT3G24210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0136g00240.t01 (Vitis vinifera), 5'ss of exon 2
GCTTCCTTTACTTGACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTTAGAGAACTTCTTACCACAAAACTTCCCTCTGGAACATTTCCGGTCAAGgtatgttgtcgtttcat--gttaagagctaatcttaatg----ttcttgaaga----tgagtttttt---tttctttttcttatagagattgtttgtgaatgtag
 || || || |||||||| || || ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||    ||||| || || ||||||||||||||   ||| ||   ||      |  |||  |||    || |||   |    | ||| |  |   | |||||  ||| ||  | |||||||         
TCTGCCATTGCTTGACATTCTCGCTAACAAGGTTAAGGCAATTCGCCGTCTAAGAGAACTGCTTACAACAAAACTTCCAATGGGAACTTTCCCTGTCAAGgtatgttgcatttttatctattctagttttctctctatgattatttttgtgtaactttaagtgtgctaaatgtctttaccttctattggttgtttgactt-----