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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgcctcttatcttgcacatataatttacacaaacctttcgaggagttgtacctaccaccaactatttcagcttttgtgtttgggaatgtctacttatgtattccatttgtggattgttttgatgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G24170.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457529|gb|EG500121.1|EG500121
EST:     ACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCG                         AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
genomic: ACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
EST: gi|152034638|gb|BP833544.2|BP833544
EST:     CCGAATTAAACTTACACCTGTTGCGTTAATGGAGGCCACCTGGTTTTGCG                         AACACTGCTTTGGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGC
genomic: CCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTG-TTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGC
EST: gi|116462906|gb|EG505498.1|EG505498
EST:     TTAATGGAGGCCACCTGTTTTGCG                         AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
genomic: TTAATGGAGGCCACCTGTTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
EST: gi|124810719|gb|EH895585.1|EH895585
EST:     AGGCCACCTGTTTTGCG                         AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
genomic: AGGCCACCTGTTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgggaatgtctacttatgtattccatttgtggattgttttgatgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG
                                        ttttgat  putative branch site (score: 4)
                 ttatgtatt  TA-rich tract