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...tatgtttgcaatatgatttctctaaattagtctgtgagaaaaactattaactgctatttatggaaagtccactgagttatacataaactgtcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGG
species | Arabidopsis thaliana |
transcript | AT3G24170.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACAT GAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGEST: gi|116457529|gb|EG500121.1|EG500121
genomic: TATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttct ... tcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG
EST: AGTCGGGCGCAAAAGCCTAATATTCCTGGACAT GAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGEST: gi|116428975|gb|EG471567.1|EG471567
genomic: AGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttct ... tcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG
EST: TATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACAT GAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGEST: gi|116462895|gb|EG505487.1|EG505487
genomic: TATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttct ... tcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG
EST: TATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACAT GAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG
genomic: TATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttct ... tcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG
attaactgctatttatggaaagtccactgagttatacataaactgtcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGG
tattaac putative branch site (score: 1)
ctgtctttt putative PPT
ttatacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtttgcaatatgatttctctaaattagtctgtgagaaaaactattaactgctatttatggaaagtccactgagttatacataaactgtcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG