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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCTCATCTATCTTCTGGCGAAACCTTCCTCTGAATCCAGCACGgtaataatcagtgacatgatgatgaatatattgactatttaagctaaaatatgtagtgtgtttcttag

Basic information

species Arabidopsis thaliana
transcript AT3G24110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G45410.1 (Glycine max), 5'ss of exon 3
---GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCTCATCTATCTTCTGGCGAAACCTTCCTCTGAATCCAGCACGgtaataatcagtgacatgatgatgaatatattgactatttaagctaaaatatgtagtgtgtttct-tag------------------------------
    |||||  ||||||||||||| || ||||| ||||||||||||||||| ||||| || |||||| |||| || ||  ||||||| ||    ||    |  ||| | |||||  || | ||| |     |  |   | || ||  | | |||| |  |     ||| ||                               
GTACTGTGATCTTGATGGAAGCAAGGGCATACAGTTCAATGAGTTTATAGTTCTTCTATGCCTCATCCATCTCCTAGCAGAACCTTCATCC---TCTGATATTgtactcatcagaaacttaatgttatgctttcttgatcttgaaattgatatatctgcttaaagtctgtaatcactataatgattatatttcttttctcag

upper sequence: AT3G24110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0029g00070.t01 (Vitis vinifera), 5'ss of exon 3
GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCTCATCTATCTTCTGGCGAAACCTTCC---TCTGA--ATCCAGCA-CGgtaataa--tcagtgaca------tgatgatgaat-----atattgactatttaagctaaaat-atgtagtg-tgtttcttag
 ||||| | |||||| ||  |||||||||||||||||||||| || ||  |||| |||||||||||||| ||   | ||||||||   |||    |||| | | |   |||||  | | | |        | ||  | |||      | | |      |  |||||||| || ||| | | | | | ||
CTGTGATGCTGATGGGAGTCAAGGGATACAATTCAATGAGTTCATTGTTATTCTGTGTCTCATCTATCTCCTAATGGAACCTTCCACCTCTACTCATCCTgtatccccaataaacttaataattctttttttattttaaatttcttgtgtcggtggcatgggctaaaatcatttagggatatgtttcag