1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ggataacctttccatgctgataaactttaatcatgatactaaacatatggatcatgtagcatttgggcaacaatctttttcttttttttttttttttcagGGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGTTCGATGTTAGTCAGGTCTTCAAATGTATTATCCACTGGGACTGTGGAAC
species | Arabidopsis thaliana |
transcript | AT3G23640.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TTGGCCAGATTCTGGAGACCAAATATATGAAGGGAACAACCTTCCACATG GGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGTEST: gi|125221042|gb|EL235127.1|EL235127
genomic: TTGGCCAGATTCTGGAGACCAAATATATGAAGGGAACAACCTTCCACATGgtaagtacct ... tttttttcagGGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGT
EST: TTGGCCAGATTCTGGAGACCAAATATATGAAGGGAACAACCTTCCACATG GGAAATGGATGTTGGTGGACAAAGAGCCTCAATCTTCGGATGGTAAACAGGEST: gi|125207444|gb|EL222398.1|EL222398
genomic: TTGGCCAGATTCTGGAGACCAAATATATGAAGGGAACAACCTTCCACATGgtaagtacct ... tttttttcagGGAAATGGATGTTGGTGGACAA-GAGCCTCAATCTTCGGATGGTAAACAGG
EST: ATTCTGGAGACCAAATATATGAAGGGAACAACCTTCCACATG GGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGT
genomic: ATTCTGGAGACCAAATATATGAAGGGAACAACCTTCCACATGgtaagtacct ... tttttttcagGGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGT
tatggatcatgtagcatttgggcaacaatctttttcttttttttttttttttcagGGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGTTCGATGTTAGTCAGGTCTTCAAATGTATTATCCACTGGGACTGTGGAAC
caacaatctttttctt CT-rich tract
aacaatctttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggataacctttccatgctgataaactttaatcatgatactaaacatatggatcatgtagcatttgggcaacaatctttttcttttttttttttttttcagGGAAATGGATGTTGGTGGACAAGAGCCTCAATCTTCGGATGGTAAACAGGTTCGATGTTAGTCAGGTCTTCAAATGTATTATCCACTGGGACTGTGGAAC
- - - cctttcc
- - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - - aaacata