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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattatcaataacagatgagtgtagtggagtgtgttctataaatgctcagactcttaaaacaaacctgaaaatgttgcttcagGTAGGCGAGGAGTGTTTGATGGTACAGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGCTAAAACTTTTGACGG

Basic information

species Arabidopsis thaliana
transcript AT3G23070.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23070.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G436001_T02 (Zea mays), 3'ss of exon 9
-gtaaaattatcaataacagat-----gagtgtagtggagtgtgttctataaatgctcagactcttaaaacaaacctgaaaatgttgcttc-------agGTAGGCGAGGAGTGTTTGATGGTACAGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGCTAAAACTTTTGACGG
  | | ||||   | |  ||||     |    ||   |||| | || | ||   | |     | |        |  |  |  |  | | ||       ||| ||  ||||||| ||||| || ||| | ||||||||||||||||| ||||| ||||| ||| |||| || ||  | ||||| || ||  ||||||  | 
acttatattactgacatgagatctcgtgtccttaaaagagtcttttttgtatcagtttctgttttcttgcttcatttttacttcctccatccacttgcagGAAGAAGAGGAGTTTTTGACGGCACAATTGAGAACATGCACTTGCACTGGAAGTACAGGGAGCTGGTGAAGATACTAGTGAAAGCGAAGTCTTTTGCAGA

upper sequence: AT3G23070.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA20G34730.1 (Glycine max), 3'ss of exon 5
----------gtaaaattatcaataacagatgagtgtagtggagtgtgttctataa--atgctcagactcttaaaacaaacctgaaaat--gttgcttcagGTAGGCGAGGAGTGTTTGATGGTACAGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGCTAAAACTTTTGACGG
           |  | ||  |  ||||   ||    |     | |   |||    |  ||  |  ||  |||| |  |||    | |||  || | ||||||||| || || || |||||||||||  | ||||||||||||||||||||||| ||| | ||  ||||||| || ||||||||||||||||| |||||   
tttaaatcagctttatttccccttaacccctgtccttcaatcattccattcccccatcattatgtgatgcttatag-aaattgaataatttgtggattcagGTAGACGTGGGGTTTTTGATGGTACTATTGAGAACATGCACTTGCATTGGAAGTACCGGGAACTGGTCAAGATAATTGTGAAGGCTAAAACCTTTGAACA

upper sequence: AT3G23070.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv05s0020g04770.t01 (Vitis vinifera), 3'ss of exon 5
gtaaaattatcaataacagatgagtgtagtggagtgtgttctataaatgctcagactcttaaaacaaacctgaaaatgttgcttcagGTAGGCGAGGAGTGTTTGATGGTACAGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGCTAAAACTTTTGACGG
||||||| |      ||   | |   | ||   |  |  ||| | |  |   ||   ||    |   |  || || | ||  |||||||||||| ||||| |||  ||| ||||||||||| ||||| ||||||||||| ||| | ||| |||| || || ||||||||||| ||||| ||||||  
gtaaaat-actgtccacttgtcaaatttgtcatgctttgtctttcagggtatagtaact----atggaggtgtaattcttatttcagGTAGGCGTGGAGTTTTTTCTGGGACAGTGGAGAATATGCATTTGCATTGGAAGTACCGGGAGCTGGTTAAGATCATTGTGAAGGCCAAAACCTTTGACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtgttctataaatgctcagactcttaaaacaaacctgaaaatgttgcttcagGTAGGCGAGGAGTGTTTGATGGTACAGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGCTAAAACTTTTGACGG
                                              ttgcttc  CT-rich tract
      ttctataaat  TA-rich tract