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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATGCGGACCAATAAATCGTCTCCAATGGAGCCTACTTATCTTGCCCAGCATCCTTTGTTTGATCAGgtatataagtaccgagatgtttgatgtatatgtttgtctgtactcggtgtgtgtcatactaaacctatggctattggtttaacacgaatgggcag

Basic information

species Arabidopsis thaliana
transcript AT3G20810.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164050828|gb|ES009149.1|ES009149
EST:     CTTATCTTGCCCAGCATCCTTTGTTTGATCAG                         ATAAATGAACTGAGAGATGATATATGTATTCCTGATTACTGTTTTGTCGGT
genomic: CTTATCTTGCCCAGCATCCTTTGTTTGATCAGgtatataagt ... gaatgggcagATAAATGAACTGAGAGATGATATATGTATTCCTGATTACTGTTTTGTCGGT
EST: gi|124721138|gb|EH812540.1|EH812540
EST:     CTTGCCCAGCATCCTTTGTTTGATCAG                         ATAAATGAACTGAGAGATGATATATGTATTCCTGATTACTGTTTTGTCGGT
genomic: CTTGCCCAGCATCCTTTGTTTGATCAGgtatataagt ... gaatgggcagATAAATGAACTGAGAGATGATATATGTATTCCTGATTACTGTTTTGTCGGT