1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatcgtttggcctgcaattcatatgtttctagtttacggaaacttctttacttagatgctttctccttctactgaagttttgatatcatctgttcttcagGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGAACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGTCAG
species | Arabidopsis thaliana |
transcript | AT3G20810.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCACATCATAATATACTTGCTCAG GTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGAAEST: gi|86083583|gb|DR379342.1|DR379342
genomic: CCACATCATAATATACTTGCTCAGgtaactacgg ... tgttcttcagGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGAA
EST: GGACAGTTACTCCGTTACACCATGATCCACATCATAATATACTTGCTCAG GTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGAA
genomic: GGACAGTTACTCCGTTACACCATGATCCACATCATAATATACTTGCTCAGgtaactacgg ... tgttcttcagGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGAA
ctttacttagatgctttctccttctactgaagttttgatatcatctgttcttcagGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGAACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGTCAG
ttttgat putative branch site (score: 4)
tctgttcttc putative PPT
ttttgatat TA-rich tract