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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATATGTTATTTTACGAATAGGTGATCAAGTTATCCGCAGTAAGAAGAACAGTCAAACTACTGTGATTGGGGCTCCTGGTCAGCCAATCTGGAACCAGgttgaactgctcaatatatcttaatggcttattcataatctggtggtggattatagtatatgctgaattcctaaaatttaatagactatttctgtatcatatatatggtcag

Basic information

species Arabidopsis thaliana
transcript AT3G19830.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19830.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G152278_T01 (Zea mays), 5'ss of exon 5
TCCATATGTTATTTTACGAATAGGTGATCAAGTTATCCGCAGTAAGAAGAACAGTCAAACTACTGTGATTGGGGCTCCTGGTCAGCCAATCTGGAACCAGgttgaactgctcaatatatcttaatggcttattcataatctggtggtggattatagtatatgctgaattcctaaaatttaatagactatttctgtatcatatatatggtcag
||| |||||| |  |    || | ||||||||| ||    || ||||||||||||||||| |||||||||||    || ||  | ||||| ||||| || ||  | ||  ||||  | ||| ||       |   |  ||||  |    |||  | |  | | |    | || | |  ||  | |  |                        
TCCTTATGTTGTCATGATTATTGATGATCAAGTAATAAAGAGCAAGAAGAACAGTCAAACAACTGTGATTGGACTACCGGGAGAACCAATTTGGAATCAAgtaaagct--tcaac-tctctgaaca---cgtgtgttttctgaagacatatttca-tgcacgatatcatgcttatagatacaacatcaaacag-------------------

upper sequence: AT3G19830.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0010g01430.t01 (Vitis vinifera), 5'ss of exon 5
TCCATATGTTATTTTACGAATAGGTGATCAAGTTATCCGCAGTAAGAAGAACAGTCAAACTACTGTGATTGGGGCTCCTGGTCAGCCAATCTGGAACCAGgttgaactgctcaatatatcttaatggcttattcataatctggtggtggattat--agtatatgctgaattcctaaaatttaatagactatttctgtatcatatatatggtcag----------------------------
||| || || | | || | ||||| |||||    || || ||||| ||||||||||| || ||||| |||||| |||||||| ||||||| ||||| |||||  | || || | | | || |  |    ||||     ||     ||  | | |  | |     ||       | |  |   || || |  || |||   | | |  | |||||                            
TCCTTACGTCACTCTAAGCATAGGAGATCAGAAAATACGTAGTAAAAAGAACAGTCAGACCACTGTCATTGGGCCTCCTGGTGAGCCAATTTGGAATCAGgtgaagcttcttagtgtttcatcttcatctattgtgtttcattctgtaaactgttcaatcagcactctggagtttatgtgagatggattggttttgt-ctagaaaacttgtcagtaatcatgtttttctccattggcggcag