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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctcttaagacaaattattgtattctcttctgtatttctgtgttctagtttctctgtttcccattgtgtaaattataactcttctcgccagATTGTGCGTGAACAAGCAGAAATAGCATCTGTTCAAGGGCCTCATGCGGAAGGCATTATTGATGCTTCTGAGGTGCTGACTCGTTCTGACACTGCATCGA

Basic information

species Arabidopsis thaliana
transcript AT3G19670.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068243|gb|DR364000.1|DR364000
EST:     ACAATAAGATTACGAAGCAATCAACATGGACAATGCCGGAAGAGATGAAG                         ATTGTGCGTGAACAAGCAGAAATAGCATCTGTTCAAGGGCCTCATGCGGAA
genomic: ACAATAAGATTACGAAGCAATCAACATGGACAATGCCGGAAGAGATGAAGgtttctctta ... ttctcgccagATTGTGCGTGAACAAGCAGAAATAGCATCTGTTCAAGGGCCTCATGCGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgttctagtttctctgtttcccattgtgtaaattataactcttctcgccagATTGTGCGTGAACAAGCAGAAATAGCATCTGTTCAAGGGCCTCATGCGGAAGGCATTATTGATGCTTCTGAGGTGCTGACTCGTTCTGACACTGCATCGA
                                    ttataac  putative branch site (score: 2)
                                          ctcttctcgcc  CT-rich tract
                          attgtgtaaattataa  TA-rich tract