Sequence
atgc intronic sequence ATGC exonic sequenceAGGATACGCTGGCATCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGGgtaagaatctgcgcaaaaagttgtctatcttatacttaaatttatgattaatgtatatgatttttgtgtatattgaattccttgttaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G19490.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G19490.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G40920.1 (Glycine max), 5'ss of exon 3
AGGATACGCTGGCATCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGGgtaagaatctgcgcaaaaagttgtctatcttatacttaaatttatgattaatgtatatgatttttgtgtatattgaattccttgttaacag------------
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AGGATATGCAGGCATCATATTTGAAGAATCTCTAGCCTTCAATAAAAGTGGAGTGGGACTGTTGATGGCTGTAAGCTTATGGGTGATACGGAGTATTGGGgtaaatgtctatctttttgtgttttaacttttgagattaatcagaatttaatgtgtcc-attgttatgcttttgagatt--taggttgcagttgctgtttgtc
upper sequence: AT3G19490.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv03s0180g00120.t01 (Vitis vinifera), 5'ss of exon 3
AGGATACGCTGGCATCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGGgtaagaatc-----tgcg-caaaaagttgtctatcttata-cttaaatttatgattaatgtatatgatttttgtgtatattgaattccttgttaacag---
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GGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTGTGAGCTTATGGGTTATAAGAAGCATTGGGgtaagattcatttttgcttcttgagattattagtgatatttcttttagctgtaattta-atatttgattccttctccatttgcctgtatggatatgaaaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124976456|gb|EL049872.1|EL049872EST: GAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGG GCTCCTTCAACTGAAATAACTGTTTTAGATCTT
genomic: GAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGGgtaagaatct ... ttgttaacagGCTCCTTCAACTGAAATAGCTGTTTTAGATCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGATACGCTGGCATCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGGgtaagaatctgcgcaaaaagttgtctatcttatacttaaatttatgattaatgtatatgatttttgtgtatattgaattccttgttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA