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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcagatcactactggaagattctgtatagcagttctatttttatgcagaaagataatcatatatacaactttctgcagGCCAATTTTTTCCGGGCTGAAAAGAAATATCCAGAAAACAAGAAAATGGGGTCACCTTCGATCATGAATCATAAGACGAACCAAAGACCACTTTCCACAA

Basic information

species Arabidopsis thaliana
transcript AT3G19180.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164028502|gb|ES111453.1|ES111453
EST:     AACTTTCCAGACACAAGGGGTTGTTCTCCATCTTTG                         GCCAATTTTTTCCGGGCTGAAAAGAAATATCCAGAAAACAAGAAAATGGGG
genomic: AACTTTCCAGACACAAGGGGTTGTTCTCCATCTTTGgtaagaatca ... ctttctgcagGCCAATTTTTTCCGGGCTGAAAAGAAATATCCAGAAAACAAGAAAATGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatagcagttctatttttatgcagaaagataatcatatatacaactttctgcagGCCAATTTTTTCCGGGCTGAAAAGAAATATCCAGAAAACAAGAAAATGGGGTCACCTTCGATCATGAATCATAAGACGAACCAAAGACCACTTTCCACAA
                                             ctttctgc  CT-rich tract
                         aaagataatcatatat  TA-rich tract