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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaaacattggttggcagaaatataaaaatagttagacgttttcccaaattattctaaaattgtgacggttagtaattaccatatatgatattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAGCAGAGGCCGCAAATTATGCCGACGGTCATTGGA

Basic information

species Arabidopsis thaliana
transcript AT3G18660.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086204|gb|DR381963.1|DR381963
EST:     CCGATATCG--CATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAG                         GAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA
genomic: CCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGgtgattcact ... tattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA
EST: gi|86053247|gb|DR349004.1|DR349004
EST:     CCGATATCG--CATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAG                         GAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA
genomic: CCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGgtgattcact ... tattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaattattctaaaattgtgacggttagtaattaccatatatgatattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAGCAGAGGCCGCAAATTATGCCGACGGTCATTGGA
        ttctaaa  putative branch site (score: 2)
                             taattaccatatatga  TA-rich tract