1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaaaacattggttggcagaaatataaaaatagttagacgttttcccaaattattctaaaattgtgacggttagtaattaccatatatgatattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAGCAGAGGCCGCAAATTATGCCGACGGTCATTGGA
species | Arabidopsis thaliana |
transcript | AT3G18660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGATATCG--CATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAG GAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAAEST: gi|86053247|gb|DR349004.1|DR349004
genomic: CCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGgtgattcact ... tattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA
EST: CCGATATCG--CATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAG GAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA
genomic: CCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGgtgattcact ... tattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAA
ccaaattattctaaaattgtgacggttagtaattaccatatatgatattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAGCAGAGGCCGCAAATTATGCCGACGGTCATTGGA
ttctaaa putative branch site (score: 2)
taattaccatatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaacattggttggcagaaatataaaaatagttagacgttttcccaaattattctaaaattgtgacggttagtaattaccatatatgatattttgcagGAACTTCACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAGCAGAGGCCGCAAATTATGCCGACGGTCATTGGA
aaaaaac
- - - - - - - - cagaaat
- - - - - - - - - - - - -aaaaata