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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGgtaaatagcatctaaaacttgcctctagactgccatgcatctttttttacattgcaattgactttccatttttatttggtttcttattaagcttgtctttcgtgttgttccttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G18210.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G11180.1 (Glycine max), 5'ss of exon 7
ATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGgtaaatagcatctaaaacttgcctctag----actgccatgcatctttttttacattgcaattgact-ttccatttttatttggtttcttattaagctt-----gtctttcgtgttgttccttgcag--------------------------------------------------
|| | ||||||| |||||| ||||| ||||| || || ||||||||||| ||||| |||||||  ||  ||||||||||  | ||||||||||||||||||| | |  ||  |    ||||  |  |     ||| | ||   |||  |  |   ||| | |||  |  | ||| ||  | |||  | |     || ||      ||   | |||  ||  |  | |                                                  
ATGTCCCTGGACGAGCTGTCCTTCATCGTGGTCGTCATCGCCATGGTGCTAGAGCTACAACATCTGGTAATCGGGTCAACCTACTTCTATGGTGCAGAAGgtgattt-cacttgttgcttgatttcattgctacttcaatttgtctaatgattttttg-agttgtttgcttcatattactctggcctatccactagtttcagaaatcacacctgtcattattctctgttcatttcttctgagtaaattaatatgaaatttgtgttatgtcattgtag

upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G31060.1 (Glycine max), 5'ss of exon 7
ATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGgtaaatagcatctaaaacttgcctctagactgccatgcatctttttttaca---ttgcaattgact-ttccatttttatttggttt--cttattaagcttgtctttcgtgttgttccttgcag-------------------------------------------------------------
|| | | ||||| |||||| ||||| ||||| || || |||||||| || ||||| |||||||  ||  ||||||||||  | ||||||||||||||||||| | |  ||  |    ||||  |  |      | |  || | | |    |   ||| | |||  |  | ||| || | ||  | |  | |||  | || || |     ||     |   ||                                                              
ATGTCCTTGGACGAGCTGTCCTTCATCGTGGTCGTCATCGCCATGGAGCTAGAGCTACAACATCTGGTAATCGGGTCAACCTACTTCTATGGTGCAGAAGgtgattt-cacttgttgcttgatttcattgcttcttcaatttgtctaatgatttttggagttgtttgcttcatattaaattactctggcctatcca-ctagtttcagaagtcacaaccgtcactatttctctgttcatttcttccctgactaaattaatatgaatttgtattatgtcattgtag

upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv17s0000g03110.t01 (Vitis vinifera), 5'ss of exon 7
ATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGgtaaatagcatctaaaacttgcctctagactgccatgcatctttttttacattgcaattgactttccatttttatttggtttcttattaagcttgtctttcgtgttgttccttgcag
|| | || ||  |||| |||||||||||||| |||||  | |||||||||||||| ||||||   || ||  |  ||||  | || |||||||| ||||||||  |    | |    |||||        |   ||||| || ||  || || | || | |  |     || |||    |   | || | |  |   ||| || |            
ATGTCCCGGGGAAAGCGGTGCTTCACCGTGGTCGCCATAGGCATGGTGCCAGAGCTACAACAGCTGGTCACAGAATCAACCTACTCCTATGGTGTAGAAGgtatttt---tatgtttcttgcagtgtttttataatgcacctatt--taaatggaaaattaactaatgcttgtatcatatggttaataatgaatccatttggttt------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830020|gb|CK119704.1|CK119704
EST:     AGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAG                         TTCTGTATTTAGAGAGCTCAAAACTCATCACAAGGATTTCTCCAGCTGGTG
genomic: AGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGgtaaatagca ... ttccttgcagTTCTGTATTTAGAGAGCTCAAAACTCATCACAAGGATTTCTCCAGCTGGTG
EST: gi|124741492|gb|EH832654.1|EH832654
EST:     GAGCCTACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAG                         TTCTGTATTTAGAGA
genomic: GAGCC-ACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGgtaaatagca ... ttccttgcagTTCTGTATTTAGAGA
EST: gi|124931098|gb|EL008489.1|EL008489
EST:     GTCAATATGCTTCTATGGTGCAGAAG                         TTCTGTATTTAGAGAGCTCAAAACTCATCACAAGGNTTTCTCCAGCTGGTG
genomic: GTCAATATGCTTCTATGGTGCAGAAGgtaaatagca ... ttccttgcagTTCTGTATTTAGAGAGCTCAAAACTCATCACAAGGATTTCTCCAGCTGGTG