1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTATGTCAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGgtaagttacagaaggaattatgttccccttagcctttgttactatatgaatatatctatggtaacattcttgttcctttcag
species | Arabidopsis thaliana |
transcript | AT3G17440.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAG GTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAGEST: gi|125198472|gb|EL213426.1|EL213426
genomic: TGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGgtaagttaca ... ttcctttcagGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAG
EST: AATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAG GTTGTAGAACAAACACTCGAAAGTTGGAACTCAAACTGCAGCTAATTTAAAEST: gi|164169803|gb|ES183223.1|ES183223
genomic: AATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGgtaagttaca ... ttcctttcagGTTGTAGAACAAACACTCGAA-GTTGGAACTCAAACTGCAGCTAATTTAAA
EST: AATGAAAAGAAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAG GTTGTAGAACAAACACTCEST: gi|124924663|gb|EL002738.1|EL002738
genomic: AATGAAAAG-AATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGgtaagttaca ... ttcctttcagGTTGTAGAACAAACACTC
EST: GAATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAG GTTGTAGAACAAACACTCGAAGTTGGAACTCAAACT
genomic: GAATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGgtaagttaca ... ttcctttcagGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGTCAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGgtaagttacagaaggaattatgttccccttagcctttgttactatatgaatatatctatggtaacattcttgttcctttcag
- - - - - - - - - - - - - - - - - - AAAGAA