1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtttctattttcctgtgtccaattaaatacggtgaatttagtcaattactgtgcattagtattaacatgtctaacataatatgtggtcttgcttgcagGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCATGTTTCTGTTTACTTGTCTCTTGCGGACTCTAGTTCATTAAGTCCAGGG
species | Arabidopsis thaliana |
transcript | AT3G17380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTATTGAGAGATATGAAACTGAGAGCTTTGAAGCTGGTGGCTACAAATG GAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCAEST: gi|86054789|gb|DR350546.1|DR350546
genomic: GCTATTGAGAGATATGAAACTGAGAGCTTTGAAGCTGGTGGCTACAAATGgtatgccatc ... ttgcttgcagGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCA
EST: GCTATTGAGAGATATGAAACTGAGAGCTTTGAAGCTGGTGGCTACAAATG GAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCA
genomic: GCTATTGAGAGATATGAAACTGAGAGCTTTGAAGCTGGTGGCTACAAATGgtatgccatc ... ttgcttgcagGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCA
aattactgtgcattagtattaacatgtctaacataatatgtggtcttgcttgcagGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCATGTTTCTGTTTACTTGTCTCTTGCGGACTCTAGTTCATTAAGTCCAGGG
tcttgctt CT-rich tract
attagtattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttctattttcctgtgtccaattaaatacggtgaatttagtcaattactgtgcattagtattaacatgtctaacataatatgtggtcttgcttgcagGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAAAGACCATGTTTCTGTTTACTTGTCTCTTGCGGACTCTAGTTCATTAAGTCCAGGG
- - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa