1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtcattgaagacaagtttcgattatatattgcttatacaattatggctttacctaaatatatagtacatttatgattttgaatttgttgatttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAAACGGTGATCGAATCTTCGCAAAGTTCGGTCGACAAT
species | Arabidopsis thaliana |
transcript | AT3G17060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAA GGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAAEST: gi|19878393|gb|AU239224.1|AU239224
genomic: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAgtacgtatac ... atttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
EST: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAA GGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAAEST: gi|86038481|gb|DR334236.1|DR334236
genomic: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAgtacgtatac ... atttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
EST: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAA GGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAAEST: gi|86038477|gb|DR334232.1|DR334232
genomic: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAgtacgtatac ... atttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
EST: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAA GGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAAEST: gi|86038476|gb|DR334231.1|DR334231
genomic: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAgtacgtatac ... atttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
EST: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAA GGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAAEST: gi|86038480|gb|DR334235.1|DR334235
genomic: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAgtacgtatac ... atttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
EST: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAA GGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
genomic: GTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAgtacgtatac ... atttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAA
ggctttacctaaatatatagtacatttatgattttgaatttgttgatttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAAACGGTGATCGAATCTTCGCAAAGTTCGGTCGACAAT
taaatatatagtacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcattgaagacaagtttcgattatatattgcttatacaattatggctttacctaaatatatagtacatttatgattttgaatttgttgatttatatagGGAGAGAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAAACGGTGATCGAATCTTCGCAAAGTTCGGTCGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - -gaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattttg