Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTCTTGGTGGTATCAATGTCCCCATTATCAATGGGGTTCTCTTTTGCACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtccattcttaacctatactatatatacgaactaataaaaagattcacgaaatcatatttatcttaatgacgaatattcacaaaaagataatatttatgatctctttgttgacatactaatttaatggtgcaaataacag

Basic information

species Arabidopsis thaliana
transcript AT3G16670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124769655|gb|EH859785.1|EH859785
EST:     CACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAAC
genomic: CACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAAC
EST: gi|124734148|gb|EH825550.1|EH825550
EST:     TGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAAGAAGTCGTAGCAGA
genomic: TGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACA-GA-GTCGTAGCAGA
EST: gi|125221143|gb|EL235228.1|EL235228
EST:     CACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGT
genomic: CACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGT
EST: gi|116475965|gb|EG518557.1|EG518557
EST:     TGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
genomic: TGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
EST: gi|125068666|gb|EL134715.1|EL134715
EST:     TGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
genomic: TGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
EST: gi|125102666|gb|EL157347.1|EL157347
EST:     CACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTC
genomic: CACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTC
EST: gi|124720413|gb|EH811815.1|EH811815
EST:     CATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAG
genomic: CATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAG
EST: gi|125227313|gb|EL241398.1|EL241398
EST:     CACTCCGGCCCCGGCTCTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
genomic: CACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
EST: gi|125046703|gb|EL118972.1|EL118972
EST:     CGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
genomic: CGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
EST: gi|125047602|gb|EL119871.1|EL119871
EST:     CCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTA                         ATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA
genomic: CCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAgttagttgtc ... caaataacagATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAA