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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcacgttagctgtttgttttcccaaaacattgattcgttttgtatgcagttttagctaaattaaaaacaagataattatgatttatgagattaggcattgaagTTCAGGAGCTGCAACAACCTTAGATTGAGTGGGTTAACGCATTTAGATAGTCCAATGGCTCACATTCACATAAGCGAGTGCAACTATGTGACCATCTCAA

Basic information

species Arabidopsis thaliana
transcript AT3G15720.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057593|gb|DR353350.1|DR353350
EST:     TTAACGGCCAGGGTTCGAGCTGGTGGGAACACAAAGGCTCTAGACCTACC                         TTCAGGAGCTGCAACAACCTTAGATTGAGTGGGTTAACGCATTTAGATAGT
genomic: TTAACGGCCAGGGTTCGAGCTGGTGGGAACACAAAGGCTCTAGACCTACCgtgagtatca ... ggcattgaagTTCAGGAGCTGCAACAACCTTAGATTGAGTGGGTTAACGCATTTAGATAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttagctaaattaaaaacaagataattatgatttatgagattaggcattgaagTTCAGGAGCTGCAACAACCTTAGATTGAGTGGGTTAACGCATTTAGATAGTCCAATGGCTCACATTCACATAAGCGAGTGCAACTATGTGACCATCTCAA
     agctaaa  putative branch site (score: 3)
        taaattaaaaacaaga  TA-rich tract