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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaaccttctctatctgtaaagtttgaaactttgaataatatgcgtttttttgtttggttccatctgtttttgaccttttctcgatattttcagGTGATTCTTCGAAAACCCAGCAAAAAAGTCAGATTCTTTCTATTGGAATCAACAAAGGTCCGATGAATTCATATCTCTTCCGCGTAATCTGTATACTCCA

Basic information

species Arabidopsis thaliana
transcript AT3G15358.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcgtttttttgtttggttccatctgtttttgaccttttctcgatattttcagGTGATTCTTCGAAAACCCAGCAAAAAAGTCAGATTCTTTCTATTGGAATCAACAAAGGTCCGATGAATTCATATCTCTTCCGCGTAATCTGTATACTCCA
                             ttttgac  putative branch site (score: 3)
                                              tattttc  putative PPT
      tttttttgttt  TA-rich tract