Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgttaaatcatataaaggctcaaagaaatgctcactagatttgaatcgttcattgattttagtaaatattcactcgtgttggaccaatttttgctcaaacaagGTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTGGCGTTTGAGCACATGACGTTTGTGTCGAGTGGGTTGGTCGCTCCCGAGA

Basic information

species Arabidopsis thaliana
transcript AT3G14550.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116472167|gb|EG514759.1|EG514759
EST:     CGTGCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAG                         GTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTG
genomic: CGTGCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAGgtatgttgtt ... ctcaaacaagGTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTG
EST: gi|19877941|gb|AU238772.1|AU238772
EST:     CGTGCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAG                         GTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTG
genomic: CGTGCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAGgtatgttgtt ... ctcaaacaagGTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTG
EST: gi|116471558|gb|EG514150.1|EG514150
EST:     CGTGCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAG                         GTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTG
genomic: CGTGCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAGgtatgttgtt ... ctcaaacaagGTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgattttagtaaatattcactcgtgttggaccaatttttgctcaaacaagGTATATGGAGAAGACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTGGCGTTTGAGCACATGACGTTTGTGTCGAGTGGGTTGGTCGCTCCCGAGA
  cattgat  putative branch site (score: 4)
                                       tttttgctc  putative PPT
     tgattttagtaaatat  TA-rich tract