1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTTTGGGCTAGCACACCAAATGGAAACAAGAAGCTTGCTGCAGCATACCAGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCGgtgtgtatataatcctgaaattaaaaactgtgctctttttactttgttttatgatattgttctttatactccagtttttgtctttcag
species | Arabidopsis thaliana |
transcript | AT3G13460.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCG GTCAATGCAAGTGGACAATTTGTTGGTCTTGCTGAAAEST: gi|124931698|gb|EL009031.1|EL009031
genomic: AGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCGgtgtgtatat ... tgtctttcagGTCAATGCAAGTGGACAATTTGTTGGTCTTGCTGAAA
EST: AGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCG GTCAATGCAAGTGGACAATTTGTTGGTCTTGCTGAAATGACAGGACCAGTTEST: gi|164170397|gb|ES053960.1|ES053960
genomic: AGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCGgtgtgtatat ... tgtctttcagGTCAATGCAAGTGGACAATTTGTTGGTCTTGCTGAAATGACAGGACCAGTT
EST: AGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCG GTCAATGCAAGTGGACAATCTGTTGG
genomic: AGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCGgtgtgtatat ... tgtctttcagGTCAATGCAAGTGGACAATTTGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTGGGCTAGCACACCAAATGGAAACAAGAAGCTTGCTGCAGCATACCAGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCGgtgtgtatataatcctgaaattaaaaactgtgctctttttactttgttttatgatattgttctttatactccagtttttgtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG