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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCATATTGTGAAGGATGTGCCAAACAGTTTACTGAAGCATATTACTTTAGAGAACAATGAGAACAAACCTGTTACCAACAGCAGAGACACACAAGAGgtaaatatttgtgacatcttttggcttgttttactgattactccacgagcgtttttgttttcttgtgcctaactttctttgtttggatcatattag

Basic information

species Arabidopsis thaliana
transcript AT3G13460.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124892856|gb|EH971758.1|EH971758
EST:     CAATGAGAACAAACCTGTTACCAACAGCAGAGACACACAAGAG                         GTTAAGTTGGAGCAAGGTTTGAAGATTGTGAAAA
genomic: CAATGAGAACAAACCTGTTACCAACAGCAGAGACACACAAGAGgtaaatattt ... atcatattagGTTAAGTTGGAGCAAGGTTTGAAGATTGTGAAAA
EST: gi|125194081|gb|EL209035.1|EL209035
EST:     CAGAGACACACAAGAG                         GTTAAGTTGGAGCAAGGTTTGAAGATTGTGAAAATTTTCAAGGAGCATAGC
genomic: CAGAGACACACAAGAGgtaaatattt ... atcatattagGTTAAGTTGGAGCAAGGTTTGAAGATTGTGAAAATTTTCAAGGAGCATAGC
EST: gi|125132114|gb|EL174366.1|EL174366
EST:     GAGAACAATGAGAACAAACCTGTTACCAACAGCTAGTAGACACACAAGAG                         GTTAAGTTGGAGCAAGGTTTGAAG
genomic: GAGAACAATGAGAACAAACCTGTTACCAACAGC-AG-AGACACACAAGAGgtaaatattt ... atcatattagGTTAAGTTGGAGCAAGGTTTGAAG