1 5' 3' |
TGCTGAATTTTTGGTCCTTTGTCGCTCGACTGTTTTCTTCGTCTACTATTTGTTCCTTTTGGATATTCTTCGGACTTTTCGTTGATTTGATTTTCAAGAGgtaagttaataaaccgtgttccccgattctcctattaaagaggtttgtgatgtttttgatttctaggttttttgttgtttgaattttctcgtttgaaatc...
species | Arabidopsis thaliana |
transcript | AT3G13430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCTTTTGGATATTCTTCGGACTTTTCGTTGATTTGATTTTCAAGAG AGAGAGTTTGAACAAGGAAGGATTGAACTATGGAAGATGCATCAGAGACTAEST: gi|301503151|gb|HO208691.1|HO208691
genomic: TGTTCCTTTTGGATATTCTTCGGACTTTTCGTTGATTTGATTTTCAAGAGgtaagttaat ... tatgaagcagAGAGAGTTTGAACAAGGAAGGATTGAACTATGGAAGATGCATCAGAGACTA
EST: TGTTCCTTTTGGATATTCTTCGGACTTTTCGTTGATTTGATTTTCAAGAG AGAGAGTTTGAACAAGGAAGGATTGAACTATGGAAGATGCATCAGAGACTA
genomic: TGTTCCTTTTGGATATTCTTCGGACTTTTCGTTGATTTGATTTTCAAGAGgtaagttaat ... tatgaagcagAGAGAGTTTGAACAAGGAAGGATTGAACTATGGAAGATGCATCAGAGACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAATTTTTGGTCCTTTGTCGCTCGACTGTTTTCTTCGTCTACTATTTGTTCCTTTTGGATATTCTTCGGACTTTTCGTTGATTTGATTTTCAAGAGgtaagttaataaaccgtgttccccgattctcctattaaagaggtttgtgatgtttttgatttctaggttttttgttgtttgaattttctcgtttgaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcgtttg