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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGGATGATGCACGAGTTTCGTCTCCCTACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAACCCTACTCCAACTTCCTTGCTACACGCGgtaagtttgctatctcttgatcatgatcatgcatggttggccactataaacgcttcacatggcaaaaatacatagggtttgagaaagaatgctcatggatggttcttattaactatataattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G12910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12910.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv19s0027g00860.t01 (Vitis vinifera), 5'ss of exon 2
GGATTGGATGATGCACGAGTTTCGTCTCCCTACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAACCCTACTCCAACTTCCTTGCTACACGCGg-taagtttgctat--ctcttgatcatgatcatgcatggttggccactataaa-cgctt-cacatggcaaaaatacatagggtttgagaaagaatgctcatggatggttcttattaactatataattgcag
                                 ||  || | ||| |   | | | |    |  ||       | |   ||  |   |  |  | |  |   | |   ||| |   ||  |||| | ||   || | |      || |  |||   | | ||||         ||   |    ||     | | || | || || |  | || ||   | |   |||||||
---------------------------------AGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTGCAGACCAGAAAAATACTACTCACAATGCCACGACTGCTGATGACGAAGTTgtaagaaaaaacaattcaaaatacatacacacattgtgtctaaccaaaacttttattatattggttattgacgtgttttctt--ttgtgggattgcag

upper sequence: AT3G12910.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv19s0027g00870.t01 (Vitis vinifera), 5'ss of exon 2
GGATTGGATGATGCACGAGTTTCGTCTCCCTACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAACCCTACTCCAACTTCCTTGCTACACGCGgtaagtttgctatctcttgatcatgatcatgcatggttggccactataaacgcttcacatggcaaaaatacatagggtttgagaaagaatgctcatggat-ggtt-----cttattaact---atataattgcag
                                     || | ||| |   | | | |    |  ||       | |   ||  |   |  |  | |  |       |  |  |  |  |    || | ||| |    | |  |  | ||||  |||| |   || | |||||| | || | |  || | |  |  |  || ||||     ||| ||  ||    |   |||||||
------------------------------------AAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTGCAGACCAGAAAAATACTACTC-CTCACAGTGCCACGGC--TGCTGATGAAGAAGTTgtaagaaaaaacaattcaaaatacatacatacattgtgtctaaccaaaacttttattatattggttattgacttgttttcttttgtgggattgcag