1 5' 3' | 2 5' 3' | 3 5' 3' |
TGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGCAAATTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGgttagtttagtgaatttggaatggctaaacgtattaccctgattatagatttgattgtggttgatatattggctgttgctttgacatttcag
species | Arabidopsis thaliana |
transcript | AT3G12050.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCTGATGGTCTTGATTCAACG GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTEST: gi|164221633|gb|ES037855.1|ES037855
genomic: GCCTGATGGTCTTGATTCAACGgttagtttag ... gacatttcagGTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTT
EST: GAGATTTGGAAGCTGGCCTGATGGTCTTGATTCAACG GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCEST: gi|86087237|gb|DR382996.1|DR382996
genomic: GAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGgttagtttag ... gacatttcagGTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTC
EST: TTGTTCARAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACG GTRAAGATCGTTTTCGAGGAGCCTCAACCAGKAGTCACCATTGTCAATCTTEST: gi|86080472|gb|DR376229.1|DR376229
genomic: TTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGgttagtttag ... gacatttcagGTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTT
EST: TTGTYCAGAAGTGGAGATTTGGGAGCTSSCCTGATGGTCTTGATTCAACT GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTEST: gi|86080882|gb|DR376639.1|DR376639
genomic: TTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGgttagtttag ... gacatttcagGTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTT
EST: TTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACG GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTT
genomic: TTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGgttagtttag ... gacatttcagGTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGCAAATTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGgttagtttagtgaatttggaatggctaaacgtattaccctgattatagatttgattgtggttgatatattggctgttgctttgacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT