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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagttttactcatggcatgtctatcttatagtcttacttataatgagttgctcttgattctgagtctgaactttgggattaggaaacaaaaaaggagc...

Basic information

species Arabidopsis thaliana
transcript AT3G12050.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164224022|gb|ES043306.1|ES043306
EST:     TCTTACTTCACACTGACGTTCCTGAAGAGGACAG                         ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
genomic: TCTTAC-TCACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: gi|86087237|gb|DR382996.1|DR382996
EST:     GKAGTCACCATTGTCAATCTTMCTCACACTGACGTTCCTGAAGAGGACAG                         ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
genomic: GGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: gi|86080472|gb|DR376229.1|DR376229
EST:     GAGTCACCATTGTCAATCTTACTCAACACTGACGTTCCTGAAGAGGACAG                         ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
genomic: GAGTCACCATTGTCAATCTTACTCA-CACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: gi|86080882|gb|DR376639.1|DR376639
EST:     GAGTCACCATTGTCAATCTTACTCNACACTGACGTTCCTGAAGAGGACAG                         ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
genomic: GAGTCACCATTGTCAATCTTACTC-ACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
EST: gi|164120505|gb|ES004847.1|ES004847
EST:     TCTTACTCACACTGACGTTCCTGAAGAGGACAG                         ATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT
genomic: TCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagtttta ... gttgatgcagATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGgttagttttactcatggcatgtctatcttatagtcttacttataatgagttgctcttgattctgagtctgaactttgggattaggaaacaaaaaaggagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa