1 5' 3' | 2 5' 3' |
TCGTGTTGATTTGTCTGGGAGGAAACTGAGGTTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTCTCCAACAATAAGCTTGAGgttagttccaatacaaattcaaaataaaaaatttgctgcattgttacttattttgatccactctcccgaatggaattaagctgatttgtgttctctggtg...
species | Arabidopsis thaliana |
transcript | AT3G11330.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAATAAGCTTGAG TCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGTCEST: gi|125067160|gb|EL133767.1|EL133767
genomic: CAATAAGCTTGAGgttagttcca ... tgtgcaacagTCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGTC
EST: CAATAAAGCTTGAG TCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGT
genomic: CAAT-AAGCTTGAGgttagttcca ... tgtgcaacagTCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTGTTGATTTGTCTGGGAGGAAACTGAGGTTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTCTCCAACAATAAGCTTGAGgttagttccaatacaaattcaaaataaaaaatttgctgcattgttacttattttgatccactctcccgaatggaattaagctgatttgtgttctctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactctc