1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGATGAAGAGATTGAGAGACGGGAGAGAGAACTAAGGAGAGCTCTTCAAAATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACAGgttaatcaacattcataaatggctaaatggattgtcttagactctctactgatactaattaatgaattcatttcctgcag
species | Arabidopsis thaliana |
transcript | AT3G10130.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTGAAGTTGCACAG TATAATCCACCATTCACTCTCCCGTTTATGCGCCGCAACGAGGTCTCTCTCEST: gi|124861487|gb|EH945924.1|EH945924
genomic: TTTGAAGTTGCACAGgttaatcaac ... tttcctgcagTATAATCCACCATTCACTCTCCCGTTTATGCGCCGCAACGAGGTCTCTCTC
EST: ATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACAG TATAATCCACCATTCACTCTCCCGTTT
genomic: ATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACAGgttaatcaac ... tttcctgcagTATAATCCACCATTCACTCTCCCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGAAGAGATTGAGAGACGGGAGAGAGAACTAAGGAGAGCTCTTCAAAATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACAGgttaatcaacattcataaatggctaaatggattgtcttagactctctactgatactaattaatgaattcatttcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG