1 5' 3' | 2 5' 3' | 3 5' 3' |
...atctcttagggtgttatttttttttaatcattttcttcaacggatctctagtttacgtgataaacaaacaaacattgtgtaatcaatctcactctcgcagAGAAGGAACTGGAACCAGGTATGGAGAAGGGTCTGGCGACGGATCCAACGAGTCCTACAGGGAGTACTGTAGCGGACCTGTCGCCAACTCCAACCCCAAG
species | Arabidopsis thaliana |
transcript | AT3G09550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctctagtttacgtgataaacaaacaaacattgtgtaatcaatctcactctcgcagAGAAGGAACTGGAACCAGGTATGGAGAAGGGTCTGGCGACGGATCCAACGAGTCCTACAGGGAGTACTGTAGCGGACCTGTCGCCAACTCCAACCCCAAG
atctcac putative branch site (score: 3)
tctcactctc CT-rich tract
ataaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcttagggtgttatttttttttaatcattttcttcaacggatctctagtttacgtgataaacaaacaaacattgtgtaatcaatctcactctcgcagAGAAGGAACTGGAACCAGGTATGGAGAAGGGTCTGGCGACGGATCCAACGAGTCCTACAGGGAGTACTGTAGCGGACCTGTCGCCAACTCCAACCCCAAG
- ctcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatcaa