1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTGGTCGAGGATCGGGGAAATCTAGCTCAGCTTTTAACAGCCTTGGATATGGTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATGgtacgatcacgtctcacaattttagtcaaattttctttgttgagagtagagtagcatccgaaaatcttcgattgagagtttctcacaagctcgctatagattaaacattgggcccaagctggatgatctgactcgcaagaagagtgtttcttaaagttctctggtaataataacacaattgtcgatctttggtgtgtag
species | Arabidopsis thaliana |
transcript | AT3G09000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATG GATATAAGACGAGGCATGACTGGAAACCTCCGGCCGCTTGTGACAAAAGTTEST: gi|124920862|gb|EH994537.1|EH994537
genomic: ATGGTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATGgtacgatcac ... tggtgtgtagGATATAAGACGAGGCATGACTGGAAACCTCCGGCCGCTTGTGACAAAAGTT
EST: GTAGAAACCTCTCCAAAAGCTCAATCGATANGGCCATAAGACATATG GATATAAGACGAGGCATGACTGGAAACCTCCGGCCGCTTGTGGCAAAAGTTEST: gi|164187195|gb|ES052561.1|ES052561
genomic: GTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATGgtacgatcac ... tggtgtgtagGATATAAGACGAGGCATGACTGGAAACCTCCGGCCGCTTGTGACAAAAGTT
EST: AGCTCAATCGATATGGCCATAAGACATATG GATATAAGACGEST: gi|116414380|gb|EG456972.1|EG456972
genomic: AGCTCAATCGATATGGCCATAAGACATATGgtacgatcac ... tggtgtgtagGATATAAGACG
EST: ATGGTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATG GATATAAGACGAGGCATGACTGGAAACCTCCGGCCGCTTGTGACAAAAGTT
genomic: ATGGTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATGgtacgatcac ... tggtgtgtagGATATAAGACGAGGCATGACTGGAAACCTCCGGCCGCTTGTGACAAAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGTCGAGGATCGGGGAAATCTAGCTCAGCTTTTAACAGCCTTGGATATGGTAGAAACCTCTCCAAAAGCTCAATCGATATGGCCATAAGACATATGgtacgatcacgtctcacaattttagtcaaattttctttgttgagagtagagtagcatccgaaaatcttcgattgagagtttctcacaagctcgctatagattaaacattgggcccaagctggatgatctgactcgcaagaagagtgtttcttaaagttctctggtaataataacacaattgtcgatctttggtgtgtag
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