1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactgtttcgttctcagttcttcttttctttagaaaattcatgttgttcttaatcttagttagctcctggcatggaatccattcccaatattgagcctgagctgatttgtgttatatggttttgattggatcgagtagGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGGGACTGTGGTCCATGGAACCATCACTG
species | Arabidopsis thaliana |
transcript | AT3G07590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTTGTTTGGTTGTTCTTTCTTCGCATCCAAAGATGAAGCTCGTCAG GTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGGEST: gi|124972316|gb|EL046018.1|EL046018
genomic: TTTCTTTGTTTGGTTGTTCTTTCTTCGCATCCAAAGATGAAGCTCGTCAGgtactgtttc ... gatcgagtagGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGG
EST: TTTCTTTGTTTGGTTGTTCTTTCTTCGCATCCAAAGATGAAGCTCGTCAG GTTTTTGATGAAGTTAAACAAEST: gi|124790876|gb|EH880555.1|EH880555
genomic: TTTCTTTGTTTGGTTGTTCTTTCTTCGCATCCAAAGATGAAGCTCGTCAGgtactgtttc ... gatcgagtagGTTTTTGATGAAGTTAAACAA
EST: TCCAAAGATGAAGCTCGTCAG GTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGG
genomic: TCCAAAGATGAAGCTCGTCAGgtactgtttc ... gatcgagtagGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGG
cccaatattgagcctgagctgatttgtgttatatggttttgattggatcgagtagGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGGGACTGTGGTCCATGGAACCATCACTG
ttttgat putative branch site (score: 4)
tgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtttcgttctcagttcttcttttctttagaaaattcatgttgttcttaatcttagttagctcctggcatggaatccattcccaatattgagcctgagctgatttgtgttatatggttttgattggatcgagtagGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGGGACTGTGGTCCATGGAACCATCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA