1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggaactaacttcaaactcttatcatatgcttctagtttttctaaagatgtgagtacatgaatgatgagaccccatctcttgttttgtgtcaaaacaattacagATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGCCAACGGATTACATGACTGAAGTGCGGCGAGGATTGCTGATGCCAAAAGCCAACAATTGAA
species | Arabidopsis thaliana |
transcript | AT3G07580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAG ATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGCCAACGGAEST: gi|163996312|gb|ES119816.1|ES119816
genomic: GACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGgtggaactaa ... acaattacagATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGCCAACGGA
EST: GACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAG ATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGEST: gi|124748576|gb|EH838706.1|EH838706
genomic: GACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGgtggaactaa ... acaattacagATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCG
EST: GACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAG ATCCTGGCTGCAGCAAACAAGACATTACCT
genomic: GACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGgtggaactaa ... acaattacagATCCTGGCTGCAGCAAACAAGACATTACCT
gtgagtacatgaatgatgagaccccatctcttgttttgtgtcaaaacaattacagATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGCCAACGGATTACATGACTGAAGTGCGGCGAGGATTGCTGATGCCAAAAGCCAACAATTGAA
aaaacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaactaacttcaaactcttatcatatgcttctagtttttctaaagatgtgagtacatgaatgatgagaccccatctcttgttttgtgtcaaaacaattacagATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGCCAACGGATTACATGACTGAAGTGCGGCGAGGATTGCTGATGCCAAAAGCCAACAATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT