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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcatatgattatgtccttaagtatttggtcacaacctgatactgaacaaacttgaccagtaaaacttcatctctcttcttctgcgtagGCTGCTGAGCTTCTTAGACAACCGCTGCTTCAACCGTATATCCAGAAGATTCATTTGAAAGTGAATGATCCAGGAAGTAATGTGTTACCTGCGCAATGGC

Basic information

species Arabidopsis thaliana
transcript AT3G04810.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116452172|gb|EG494764.1|EG494764
EST:     GAGGTCTCGTTAAGAGTATGCTCCGGAAAAATCCAGAACTCAGACCAAGT                         GCTGCTGAGCTTCTTAGACAACCGCTGCTTCAACCGTATATCCAGAAGATT
genomic: GAGGTCTCGTTAAGAGTATGCTCCGGAAAAATCCAGAACTCAGACCAAGTgtacgtcata ... ttctgcgtagGCTGCTGAGCTTCTTAGACAACCGCTGCTTCAACCGTATATCCAGAAGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgatactgaacaaacttgaccagtaaaacttcatctctcttcttctgcgtagGCTGCTGAGCTTCTTAGACAACCGCTGCTTCAACCGTATATCCAGAAGATTCATTTGAAAGTGAATGATCCAGGAAGTAATGTGTTACCTGCGCAATGGC
                acttgac  putative branch site (score: 4)
                               cttcatctctcttctt  putative PPT
                          taaaactt  TA-rich tract