Sequence
atgc intronic sequence ATGC exonic sequenceGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G04680.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G38670.1 (Glycine max), 5'ss of exon 2
GTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaatt--ttgtttactaactacatctctgtttccag-------------------------------
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GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaacgtaac-cgccctattgcgtgcattctttctgtcaaacttattggtaagacaaaaagaaaaacttgggatatcactgatgaggagattgcaactttttgatgcag
upper sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G43930.1 (Glycine max), 5'ss of exon 2
GTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccag-------------------------------------
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GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaatgtagc-cgccatattgcgtgcattctttctgtcaatcttattggtaagacaaaaaaaaaacccacttgagaaatcactgatgaggagattgcaactttttgagtgcag
upper sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 2
GTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccag
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GTTTTTACTTGGTATGGAGCCACAATTGAAATGGATGGTATTACAGAAACTGATTATACTGCCGATGAGgt---atgcctttttttttttttgtagctttattgccca-gtaattcagactaattatagtagcatattccttgatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164109029|gb|ES161252.1|ES161252EST: CGACAATTGAGATGGATGGTGTCACGG-AACTGACTATACAGCAGATGAG ACGCCGATGGTCAGCTACATTAA
genomic: CGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattac ... ctgtttccagACGCCGATGGTCAGCTACATTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccag
- - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG