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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCCCTGTCTCTTACTTGCTTCTTTCCAAGCTTGCTAAGGGTGTTGACAAGTCATTTGATCTTCTCTCCCTTCTCCCCAAAATCCTCCCAGTTTACAAgtaagagattacttttgctctagtactcaattattctctttgacgctaggaaatttgtttctgacatactattggaatggtgaatcttttctcag

Basic information

species Arabidopsis thaliana
transcript AT3G03780.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057390|gb|DR353147.1|DR353147
EST:     AAGTCATTTGATCTTCTCTCCCTTCTCCCCAAAATCCTCCCAGTTTACAA                         GGAAGTCATTGCAGAGCTTAAGGCAGCTGGTGCCTCCTGGATTCAGCTTGA
genomic: AAGTCATTTGATCTTCTCTCCCTTCTCCCCAAAATCCTCCCAGTTTACAAgtaagagatt ... cttttctcagGGAAGTCATTGCAGAGCTTAAGGCAGCTGGTGCCTCCTGGATTCAGCTTGA
EST: gi|116471261|gb|EG513853.1|EG513853
EST:     AAGTCATTTGATCTTCTCTCCCTTCTCCCCAAAATCCTCCCAGTTTACAA                         GGAAGTCATTGCAGAGCTTAAGGCAGCTGGTGCCTCCTGGATTCAGCTTGA
genomic: AAGTCATTTGATCTTCTCTCCCTTCTCCCCAAAATCCTCCCAGTTTACAAgtaagagatt ... cttttctcagGGAAGTCATTGCAGAGCTTAAGGCAGCTGGTGCCTCCTGGATTCAGCTTGA