1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCGGGCCGGATGTTCTTGAATGGATCAACTGAGGTTGCTTGTATCTACACTCAACAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGgtttgttagatcctcaagtcttccccctttttttttttttattgtttctaatttgggatctgaggtcctattgtttcttcttcactgattgtttcctgttttcgtgctcag
species | Arabidopsis thaliana |
transcript | AT3G02750.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CNCAACAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAG AATTTTGGTTCGAGGACAGATACAATCTTEST: gi|125275203|gb|EL289288.1|EL289288
genomic: CTCAACAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGgtttgttaga ... tcgtgctcagAATTTTGGTTCGAGGACAGATACAATCTT
EST: CTCAACAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAG AATTTTGGTTCGAGGACAGATACAATCTTEST: gi|163986175|gb|ES082205.1|ES082205
genomic: CTCAACAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGgtttgttaga ... tcgtgctcagAATTTTGGTTCGAGGACAGATACAATCTT
EST: CCATGGTTGTTTGGGAG AATTTTGGTTCGAGGACAGATACAATCTTCTGTGGAGTGTTTGATGGACAT
genomic: CCATGGTTGTTTGGGAGgtttgttaga ... tcgtgctcagAATTTTGGTTCGAGGACAGATACAATCTTCTGTGGAGTGTTTGATGGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGGGCCGGATGTTCTTGAATGGATCAACTGAGGTTGCTTGTATCTACACTCAACAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGgtttgttagatcctcaagtcttccccctttttttttttttattgtttctaatttgggatctgaggtcctattgtttcttcttcactgattgtttcctgttttcgtgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG