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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGATACAATGTCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATTCACAATGgtaagattagagttgaataaattttgaagactgttaacatttgaagctagagaattttaatgtttccatttttgtaaattttctag

Basic information

species Arabidopsis thaliana
transcript AT2G47500.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116446260|gb|EG488852.1|EG488852
EST:     TCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATTCACAATG                         AGTGGACCAAGAGATCTAACGGAGAAGAGCCAGGGAGTTAATTACAGAGCA
genomic: TCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATTCACAATGgtaagattag ... aattttctagAGTGGACCAAGAGATCTAACGGAGAAGAGCCAGGGAGTTAATTACAGAGCA
EST: gi|116446238|gb|EG488830.1|EG488830
EST:     TCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATTCACAATG                         AGTGGACCAAGAGATCTAACGGAGAAGAGCCAGGGAGTTAATTACAGAGCA
genomic: TCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATTCACAATGgtaagattag ... aattttctagAGTGGACCAAGAGATCTAACGGAGAAGAGCCAGGGAGTTAATTACAGAGCA