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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatactttacatctcctctacattctagggtttcttctccctgtttcgtatttgccaaggaaagtttgctttgattgtttggactagGTCTAACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGTGTATGCTAGGGACAGTCGGTATTCCAGCGGTTTACAACGAGATACGGCT

Basic information

species Arabidopsis thaliana
transcript AT2G47240.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058770|gb|DR354527.1|DR354527
EST:     TGAAGAGTTTTTGAGAGTTACTTGTTGTTGCTTTGTCGTTCAAGGCTACG                         GTCTAACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGT
genomic: TGAAGAGTTTTTGAGAGTTACTTGTTGTTGCTTTGTCGTTCAAGGCTACGgtataatact ... tttggactagGTCTAACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctccctgtttcgtatttgccaaggaaagtttgctttgattgtttggactagGTCTAACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGTGTATGCTAGGGACAGTCGGTATTCCAGCGGTTTACAACGAGATACGGCT
                                    ctttgat  putative branch site (score: 5)
                            aaagttt  TA-rich tract