Sequence
atgc intronic sequence ATGC exonic sequencegtaagtctcaccaaaccctaattcactagttaggttaacaaatatttttctctacatatatagctcatgttatatattattgcgcagAGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCGCCGGTCCAATGGGACACCAAGCTGTGGCTATCAGAGTGAACGGAGACCG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G47040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116441919|gb|EG484511.1|EG484511EST: AAGTGTTAAACTCAGCCCTGGAACCACCACTTCCCTTAGTGGCACAGTCC AGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCG
genomic: AAGTGTTAAACTCAGCCCTGGAACCACCACTTCCCTTAGTGGCACAGTCCgtaagtctca ... tattgcgcagAGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCG
EST:
gi|86059077|gb|DR354834.1|DR354834EST: AAGTGTTAAACTCAGCCCTGGAACCACCACTTCCCTTAGTGGCACAGTCC AGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCG
genomic: AAGTGTTAAACTCAGCCCTGGAACCACCACTTCCCTTAGTGGCACAGTCCgtaagtctca ... tattgcgcagAGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttaacaaatatttttctctacatatatagctcatgttatatattattgcgcagAGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCGCCGGTCCAATGGGACACCAAGCTGTGGCTATCAGAGTGAACGGAGACCG
ggttaac putative branch site (score: 3)
aaatatttttctctac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtctcaccaaaccctaattcactagttaggttaacaaatatttttctctacatatatagctcatgttatatattattgcgcagAGGTTGAGTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCGCCGGTCCAATGGGACACCAAGCTGTGGCTATCAGAGTGAACGGAGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG